Jie Liu
Associate Professor of Computational Medicine and Bioinformatics, Medical School
Develops machine learning methods for bioinformatics, including models of genome structure and gene regulation.
Jie Liu's lab at Michigan works on genomics & computational biology and medical imaging & healthcare AI. 19 papers since 2023, 4 at top venues, mostly Nucleic Acids Research and Nature. 11 PhD students. 48 alumni, most often to Amazon. Applications close .
At a glance
- papers, 2023–2026
- 5/ year
- at T1 venues
- 21%
- PhD students
- 11
- MS students
- 0
- alumni listed
- 48
Papers by yearfrom the lab homepage, 2023–2026
- 6 papers2026 · T1 1 · collecting
- 5 papers2025 · T1 1
- 6 papers2024 · T1 1
- 2 papers2023 · T1 1
T1 venuesOtherVenues: Nucleic Acids Research, Nature, KDD, PNAS
Research focuspaper titles that use each topic's words
- Genomics & computational biology4 papers
- Medical imaging & healthcare AI0 papers
- bioinformatics0 papers
- computational medicine0 papers
- gene regulation0 papers
Paper list
From the lab homepage.
20266 papers
- ISMBAutoPCR: Automated Phenotype Concept Recognition by Prompting (opens in a new tab)
- ACL Main ConferenceBiomedical Question Answering via Multi-Level Summarization on a Local Knowledge Graph (opens in a new tab)
- KDD (T1)Enhancing Biomedical AI Foundations: Genomic Literature Knowledge Base Boosts LLMs' Mastery of Biomedical Literature (opens in a new tab)
- Diabetology International, 02/RFX6 expression is central to the development and function of the neuroendocrine compartments of the pancreas and intestine and strongly affects diabetes risk (opens in a new tab)
- Genome Research, 01/Statistically rigorous and computationally efficient chromatin stripe detection with Quagga (opens in a new tab)
- Nucleic Acids ResearchThe IGVF catalog—from genetic variation to function (opens in a new tab)
20255 papers
- Stem Cell ReportsA zinc finger-dependent, PRDM13-driven mechanism regulates retinal progenitor cell fate from mouse embryonic stem cells via WNT signaling (opens in a new tab)
- Nucleic Acids ResearchCelLink: integrating single-cell multi-omics data with weak feature linkage and imbalanced cell populations (opens in a new tab)
- Cell Stem CellChemPerturb-Seq screen identifies a small molecule cocktail enhancing human beta cell survival after transplantation (opens in a new tab)
- Nucleic Acids ResearchDeveloping a general AI model for integrating diverse genomic modalities and comprehensive genomic knowledge (opens in a new tab)
- PNAS (T1)Retinoic acid receptor assembly dynamics governs dual functions in cochlear organogenesis (opens in a new tab)
20246 papers
- Developmental Cell, 06/3D reconstruction of the mouse cochlea from scRNA-seq data suggests morphogen-based principles in apex-to-base specification (opens in a new tab)
- PLoS Computational Biology, 08/CNTools: A computational toolbox for cellular neighborhood analysis from multiplexed images (opens in a new tab)
- Nature (T1)Deciphering the impact of genomic variation on function (opens in a new tab)
- Ophthalmology Science, 10/Liquid biopsy for proliferative diabetic retinopathy: single-cell transcriptomics of human vitreous reveals inflammatory T cell signature (opens in a new tab)
- iScience, 02/Mapping the developmental potential of mouse inner ear organoids at single-cell resolution (opens in a new tab)
- Nature Genetics (in press), 12/Population-scale skeletal muscle single-nucleus multi-omic profiling reveals extensive context specific genetic regulation (opens in a new tab)
Where alumni went48 listed, 24% to industry
Industry 6Academia 19
Most often to
- Amazon
Also to
- Carnegie Mellon University
- UC San Diego
- EPFL
Apply to MichiganFall 2027
Michigan CSE Computer Science PhD
- Round
- Single round
- Opens
- —
- GRE
- See program page
- English
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- Fee
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Not yet confirmed for this intake.
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- The lab homepage
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